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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.21

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-03-05, 00:35 EST based on data in: /data/rusers/hattonc/PRODMAT/HISAT2/Aligned_Log


        General Statistics

        Showing 162/162 rows.
        Sample Name% Aligned
        P001-ABD-C1
        72.5%
        P001-ABD-C2
        70.4%
        P001-ABD-F1
        68.3%
        P001-ABD-F2
        68.7%
        P001-ABD-M1
        68.3%
        P001-ABD-M2
        70.0%
        P001-GLU-C1
        71.2%
        P001-GLU-C2
        69.7%
        P001-GLU-F1
        66.8%
        P001-GLU-F2
        68.0%
        P001-GLU-M1
        72.6%
        P001-GLU-M2
        70.2%
        P002-ABD-C1
        70.1%
        P002-ABD-C2
        70.3%
        P002-ABD-F1
        71.0%
        P002-ABD-F2
        68.8%
        P002-ABD-M1
        70.4%
        P002-ABD-M2
        70.3%
        P002-GLU-C1
        66.7%
        P002-GLU-C2
        67.6%
        P002-GLU-F1
        68.0%
        P002-GLU-F2
        68.2%
        P002-GLU-M1
        68.5%
        P002-GLU-M2
        69.6%
        P003-ABD-C1
        70.5%
        P003-ABD-C2
        70.0%
        P003-ABD-F1
        69.5%
        P003-ABD-F2
        68.8%
        P003-ABD-M1
        69.0%
        P003-ABD-M2
        70.2%
        P003-GLU-C1
        68.2%
        P003-GLU-C2
        69.2%
        P003-GLU-F1
        69.1%
        P003-GLU-F2
        68.4%
        P003-GLU-M1
        69.9%
        P003-GLU-M2
        69.8%
        P007-ABD-C1
        68.2%
        P007-ABD-C2
        67.9%
        P007-ABD-F1
        70.1%
        P007-ABD-F2
        68.0%
        P007-ABD-M1
        67.7%
        P007-ABD-M2
        68.0%
        P007-GLU-C1
        71.1%
        P007-GLU-C2
        70.0%
        P007-GLU-F1
        67.4%
        P007-GLU-F2
        69.0%
        P007-GLU-M1
        68.1%
        P007-GLU-M2
        66.8%
        P008-ABD-C1
        71.3%
        P008-ABD-C2
        71.5%
        P008-ABD-F1
        70.3%
        P008-ABD-F2
        65.2%
        P008-ABD-M1
        70.2%
        P008-ABD-M2
        68.1%
        P008-GLU-C1
        69.4%
        P008-GLU-C2
        70.2%
        P008-GLU-F1
        69.3%
        P008-GLU-F2
        68.9%
        P008-GLU-M1
        70.8%
        P008-GLU-M2
        69.9%
        P009-ABD-C1
        70.5%
        P009-ABD-C2
        68.7%
        P009-ABD-F1
        68.4%
        P009-ABD-F2
        68.0%
        P009-ABD-M1
        68.2%
        P009-ABD-M2
        70.6%
        P010-ABD-C1
        68.4%
        P010-ABD-C2
        65.8%
        P010-ABD-F1
        65.7%
        P010-ABD-F2
        65.5%
        P010-ABD-M1
        65.5%
        P010-ABD-M2
        66.9%
        P010-GLU-C1
        67.4%
        P010-GLU-C2
        68.7%
        P010-GLU-F1
        68.6%
        P010-GLU-F2
        67.0%
        P010-GLU-M1
        66.0%
        P010-GLU-M2
        66.5%
        P011-ABD-C1
        68.9%
        P011-ABD-C2
        71.1%
        P011-ABD-F1
        69.5%
        P011-ABD-F2
        68.3%
        P011-ABD-M1
        68.9%
        P011-ABD-M2
        71.3%
        P011-GLU-C1
        68.3%
        P011-GLU-C2
        69.9%
        P011-GLU-F1
        68.5%
        P011-GLU-F2
        69.3%
        P011-GLU-M1
        68.4%
        P011-GLU-M2
        68.2%
        P012-ABD-C1
        69.2%
        P012-ABD-C2
        67.8%
        P012-ABD-F1
        70.2%
        P012-ABD-F2
        68.8%
        P012-ABD-M1
        67.6%
        P012-ABD-M2
        68.3%
        P012-GLU-C1
        70.3%
        P012-GLU-C2
        69.3%
        P012-GLU-F1
        68.2%
        P012-GLU-F2
        68.8%
        P012-GLU-M1
        69.0%
        P012-GLU-M2
        69.8%
        P013-ABD-C1
        65.7%
        P013-ABD-C2
        66.9%
        P013-ABD-F1
        65.7%
        P013-ABD-F2
        66.0%
        P013-ABD-M1
        64.6%
        P013-ABD-M2
        66.0%
        P013-GLU-C1
        67.2%
        P013-GLU-C2
        68.9%
        P013-GLU-F1
        65.1%
        P013-GLU-F2
        66.9%
        P013-GLU-M1
        64.8%
        P013-GLU-M2
        64.3%
        P014-ABD-C1
        68.9%
        P014-ABD-C2
        68.7%
        P014-ABD-F1
        67.4%
        P014-ABD-F2
        67.8%
        P014-ABD-M1
        66.0%
        P014-ABD-M2
        68.6%
        P014-GLU-C1
        70.5%
        P014-GLU-C2
        69.3%
        P014-GLU-F1
        69.4%
        P014-GLU-F2
        69.5%
        P014-GLU-M1
        71.0%
        P014-GLU-M2
        69.5%
        P015-ABD-C1
        69.4%
        P015-ABD-C2
        69.7%
        P015-ABD-F1
        69.6%
        P015-ABD-F2
        69.3%
        P015-ABD-M1
        70.2%
        P015-ABD-M2
        71.7%
        P015-GLU-C1
        68.1%
        P015-GLU-C2
        73.0%
        P015-GLU-F1
        69.0%
        P015-GLU-F2
        70.4%
        P015-GLU-M1
        69.1%
        P015-GLU-M2
        68.0%
        P016-ABD-C1
        69.2%
        P016-ABD-C2
        65.1%
        P016-ABD-F1
        70.9%
        P016-ABD-F2
        69.7%
        P016-ABD-M1
        72.3%
        P016-ABD-M2
        72.3%
        P016-GLU-C1
        69.1%
        P016-GLU-C2
        68.2%
        P016-GLU-F1
        68.1%
        P016-GLU-F2
        73.0%
        P016-GLU-M1
        69.4%
        P016-GLU-M2
        69.7%
        P018-ABD-C1
        69.2%
        P018-ABD-C2
        69.0%
        P018-ABD-F1
        70.2%
        P018-ABD-F2
        69.1%
        P018-ABD-M1
        68.8%
        P018-ABD-M2
        71.3%
        P018-GLU-C1
        69.8%
        P018-GLU-C2
        70.7%
        P018-GLU-F1
        68.4%
        P018-GLU-F2
        69.8%
        P018-GLU-M1
        69.2%
        P018-GLU-M2
        69.0%

        HISAT2

        HISAT2 is a fast and sensitive alignment program for mapping NGS reads (both DNA and RNA) against a reference genome or population of reference genomes.DOI: 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4.

        Please note that single mate alignment counts are halved to tally with pair counts properly.

        Created with MultiQC