A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-03-05, 00:35 EST
based on data in:
/data/rusers/hattonc/PRODMAT/HISAT2/Aligned_Log
General Statistics
Showing 162/162 rows.
| Sample Name | % Aligned |
|---|---|
| P001-ABD-C1 | 72.5% |
| P001-ABD-C2 | 70.4% |
| P001-ABD-F1 | 68.3% |
| P001-ABD-F2 | 68.7% |
| P001-ABD-M1 | 68.3% |
| P001-ABD-M2 | 70.0% |
| P001-GLU-C1 | 71.2% |
| P001-GLU-C2 | 69.7% |
| P001-GLU-F1 | 66.8% |
| P001-GLU-F2 | 68.0% |
| P001-GLU-M1 | 72.6% |
| P001-GLU-M2 | 70.2% |
| P002-ABD-C1 | 70.1% |
| P002-ABD-C2 | 70.3% |
| P002-ABD-F1 | 71.0% |
| P002-ABD-F2 | 68.8% |
| P002-ABD-M1 | 70.4% |
| P002-ABD-M2 | 70.3% |
| P002-GLU-C1 | 66.7% |
| P002-GLU-C2 | 67.6% |
| P002-GLU-F1 | 68.0% |
| P002-GLU-F2 | 68.2% |
| P002-GLU-M1 | 68.5% |
| P002-GLU-M2 | 69.6% |
| P003-ABD-C1 | 70.5% |
| P003-ABD-C2 | 70.0% |
| P003-ABD-F1 | 69.5% |
| P003-ABD-F2 | 68.8% |
| P003-ABD-M1 | 69.0% |
| P003-ABD-M2 | 70.2% |
| P003-GLU-C1 | 68.2% |
| P003-GLU-C2 | 69.2% |
| P003-GLU-F1 | 69.1% |
| P003-GLU-F2 | 68.4% |
| P003-GLU-M1 | 69.9% |
| P003-GLU-M2 | 69.8% |
| P007-ABD-C1 | 68.2% |
| P007-ABD-C2 | 67.9% |
| P007-ABD-F1 | 70.1% |
| P007-ABD-F2 | 68.0% |
| P007-ABD-M1 | 67.7% |
| P007-ABD-M2 | 68.0% |
| P007-GLU-C1 | 71.1% |
| P007-GLU-C2 | 70.0% |
| P007-GLU-F1 | 67.4% |
| P007-GLU-F2 | 69.0% |
| P007-GLU-M1 | 68.1% |
| P007-GLU-M2 | 66.8% |
| P008-ABD-C1 | 71.3% |
| P008-ABD-C2 | 71.5% |
| P008-ABD-F1 | 70.3% |
| P008-ABD-F2 | 65.2% |
| P008-ABD-M1 | 70.2% |
| P008-ABD-M2 | 68.1% |
| P008-GLU-C1 | 69.4% |
| P008-GLU-C2 | 70.2% |
| P008-GLU-F1 | 69.3% |
| P008-GLU-F2 | 68.9% |
| P008-GLU-M1 | 70.8% |
| P008-GLU-M2 | 69.9% |
| P009-ABD-C1 | 70.5% |
| P009-ABD-C2 | 68.7% |
| P009-ABD-F1 | 68.4% |
| P009-ABD-F2 | 68.0% |
| P009-ABD-M1 | 68.2% |
| P009-ABD-M2 | 70.6% |
| P010-ABD-C1 | 68.4% |
| P010-ABD-C2 | 65.8% |
| P010-ABD-F1 | 65.7% |
| P010-ABD-F2 | 65.5% |
| P010-ABD-M1 | 65.5% |
| P010-ABD-M2 | 66.9% |
| P010-GLU-C1 | 67.4% |
| P010-GLU-C2 | 68.7% |
| P010-GLU-F1 | 68.6% |
| P010-GLU-F2 | 67.0% |
| P010-GLU-M1 | 66.0% |
| P010-GLU-M2 | 66.5% |
| P011-ABD-C1 | 68.9% |
| P011-ABD-C2 | 71.1% |
| P011-ABD-F1 | 69.5% |
| P011-ABD-F2 | 68.3% |
| P011-ABD-M1 | 68.9% |
| P011-ABD-M2 | 71.3% |
| P011-GLU-C1 | 68.3% |
| P011-GLU-C2 | 69.9% |
| P011-GLU-F1 | 68.5% |
| P011-GLU-F2 | 69.3% |
| P011-GLU-M1 | 68.4% |
| P011-GLU-M2 | 68.2% |
| P012-ABD-C1 | 69.2% |
| P012-ABD-C2 | 67.8% |
| P012-ABD-F1 | 70.2% |
| P012-ABD-F2 | 68.8% |
| P012-ABD-M1 | 67.6% |
| P012-ABD-M2 | 68.3% |
| P012-GLU-C1 | 70.3% |
| P012-GLU-C2 | 69.3% |
| P012-GLU-F1 | 68.2% |
| P012-GLU-F2 | 68.8% |
| P012-GLU-M1 | 69.0% |
| P012-GLU-M2 | 69.8% |
| P013-ABD-C1 | 65.7% |
| P013-ABD-C2 | 66.9% |
| P013-ABD-F1 | 65.7% |
| P013-ABD-F2 | 66.0% |
| P013-ABD-M1 | 64.6% |
| P013-ABD-M2 | 66.0% |
| P013-GLU-C1 | 67.2% |
| P013-GLU-C2 | 68.9% |
| P013-GLU-F1 | 65.1% |
| P013-GLU-F2 | 66.9% |
| P013-GLU-M1 | 64.8% |
| P013-GLU-M2 | 64.3% |
| P014-ABD-C1 | 68.9% |
| P014-ABD-C2 | 68.7% |
| P014-ABD-F1 | 67.4% |
| P014-ABD-F2 | 67.8% |
| P014-ABD-M1 | 66.0% |
| P014-ABD-M2 | 68.6% |
| P014-GLU-C1 | 70.5% |
| P014-GLU-C2 | 69.3% |
| P014-GLU-F1 | 69.4% |
| P014-GLU-F2 | 69.5% |
| P014-GLU-M1 | 71.0% |
| P014-GLU-M2 | 69.5% |
| P015-ABD-C1 | 69.4% |
| P015-ABD-C2 | 69.7% |
| P015-ABD-F1 | 69.6% |
| P015-ABD-F2 | 69.3% |
| P015-ABD-M1 | 70.2% |
| P015-ABD-M2 | 71.7% |
| P015-GLU-C1 | 68.1% |
| P015-GLU-C2 | 73.0% |
| P015-GLU-F1 | 69.0% |
| P015-GLU-F2 | 70.4% |
| P015-GLU-M1 | 69.1% |
| P015-GLU-M2 | 68.0% |
| P016-ABD-C1 | 69.2% |
| P016-ABD-C2 | 65.1% |
| P016-ABD-F1 | 70.9% |
| P016-ABD-F2 | 69.7% |
| P016-ABD-M1 | 72.3% |
| P016-ABD-M2 | 72.3% |
| P016-GLU-C1 | 69.1% |
| P016-GLU-C2 | 68.2% |
| P016-GLU-F1 | 68.1% |
| P016-GLU-F2 | 73.0% |
| P016-GLU-M1 | 69.4% |
| P016-GLU-M2 | 69.7% |
| P018-ABD-C1 | 69.2% |
| P018-ABD-C2 | 69.0% |
| P018-ABD-F1 | 70.2% |
| P018-ABD-F2 | 69.1% |
| P018-ABD-M1 | 68.8% |
| P018-ABD-M2 | 71.3% |
| P018-GLU-C1 | 69.8% |
| P018-GLU-C2 | 70.7% |
| P018-GLU-F1 | 68.4% |
| P018-GLU-F2 | 69.8% |
| P018-GLU-M1 | 69.2% |
| P018-GLU-M2 | 69.0% |
HISAT2
HISAT2 is a fast and sensitive alignment program for mapping NGS reads (both DNA and RNA) against a reference genome or population of reference genomes.DOI: 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4.
Please note that single mate alignment counts are halved to tally with pair counts properly.
